Pathways:
Accession: P61
Authors:Julia Helmecke
Description:Most common variant of the TCA cycle.
Organisms:- P61S
- Bacillus subtilis P61S11
- Bacteroides fragilis P61S19
- chlamydomonas reinhardtii P61S17
- corynebacterium glutamicum P61S39
- Homo sapiens P61S9
- Neisseria gonorrhoeae P61S37
- serratia plymuthica 4Rx13 P61S33
- streptomyces clavuligerus P61S18
Accession: P87
Authors:Carsten Reuse
Organisms:- P87S
- Acinetobacter baumannii P87S45
- chlamydomonas reinhardtii P87S17
- Chlorella variabilis P87S14
- Homo sapiens P87S9
- Kappaphycus alvarezii P87S36
- Mus musculus P87S21
- Mycobacterium tuberculosis P87S42
- serratia plymuthica 4Rx13 P87S33
Accession: P1
Authors:Julia Helmecke
Description:Central carbon metabolism of crenarchaea.
Organisms:
Accession: P2
Authors:Julia Helmecke
Organisms:- P2S
- Haloarcula hispanica ATCC 33960 P2S26
- Bacteroides fragilis P2S19
- chlamydomonas reinhardtii P2S17
- Glycine max P2S38
- Homo sapiens P2S9
- Mycobacterium tuberculosis P2S42
- Saccharolobus solfataricus P2S2
- serratia plymuthica 4Rx13 P2S33
- Staphylococcus epidermidis RP62A (MRSE) P2S20
- Sulfolobus acidocaldarius P2S1
- Sulfolobus islandicus P2S5
Accession: P88
Authors:Julian Quehenberger, Lu Shen, Sonja-Verena Albers, Bettina Siebers and Oliver Spadiut
Description:Central carbohydrate metabolism in Sulfolobus spp. The pathways for hexose and pentose degradation as well as glycogen, trehalose, and pentose formation are shown. D-arabinose (dashed lines) can only be utilized as carbon source by S. solfataricus and not by S. acidocaldarius. The current understanding of regulation by effectors is indicated by green stars and red boxes for activator and inhibitors, respectively. Enzymes catalyzing different reactions are depicted as numbers: (1) glucose dehydrogenase (broad substrate specificity); (2) gluconate dehydratase; (3) 2-keto-3-deoxygluconate kinase; (4) 2-keto-3-deoxy-(6-phospho) gluconate aldolase (broad substrate specificity); (5) non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase; (6) glyceraldehyde-3-phosphate dehydrogenase; (7) phosphoglycerate kinase; (8) phosphoglycerate mutase; (9) glyceraldehyde:ferredoxin oxidoreductase; (10) glycerate kinase; (11) enolase; (12) pyruvate kinase; (13) phosphoenolpyruvate synthetase; (14) pyruvate:ferredoxin oxidoreductase; (15) triosephosphate isomerase; (16) fructose-1,-6-bisphosphate aldolase/phosphatase; (17) phosphoglucose/phosphomannose isomerase; (18) phosphoglucomutase/phosphomannomutase; (19) NTP-glucose-1-phosphate uridylyltransferase; (20) glycogen synthase; (21) glycogen phosphorylase; (22) glucan-1,4-a-glucosidase; (23) hexokinase; (24) maltooligosyltrehalose synthase/maltooligosyltrehalose trehalohydrolase; (25) D-arabinose dehydrogenase; (26) D-arabinoate dehydratase; (27) L-arabinoate/D-xylonate dehydratase; (28) glycolaldehyde dehydrogenase/glycolaldehyde:ferredoxin oxidoreductase; (29) glycolate dehydrogenase; (30) 2-keto-3-deoxy-arabinoate/xylonate dehydratase; (31) a-ketoglutarate semi-aldehyde dehydrogenase; (32) citrate synthase; (33) aconitase; (34) isocitrate dehydrogenase; (35) a-ketoglutarate:ferredoxin oxidoreductase; (36) succinyl-CoA synthetase; (37) succinate dehydrogenase; (38) fumarase; (39) malate dehydrogenase; (40) isocitrate lyase; (41) malate synthetase. EMP, Embden–Meyerhof–Parnas; ED, Entner–Doudoroff; spED, semi-phosphorylative ED; npED, non-phosphorylative ED; RuMP, reversed ribulose monophosphate; TCA, tricarboxylic acid; G1P, glucose 1-phosphate; G6P, glucose 6-phosphate; F6P, fructose 6-phosphate; DHAP, dihydroxyacetone phosphate; GAP, glyceraldehyde 3-phosphate; BPG, 1,3-bisphosphoglycerate; 3-PG, 3-phosphoglycerate; 2-PG, 2-phosphoglycerate; PEP, phosphoenolpyruvate; D-KDG, 2-keto-3-deoxy-D-gluconate; D-KDGal, 2-keto-3-deoxy-D-galactonate; D-KDPG, 2-keto-3-deoxy-6-phosphate-D-gluconate; D-KDPGal, 2-keto-3-deoxy-6-phosphate-D-galactonate; L-KDA, 2-keto-3-deoxy-L-arabinoate; D-KDA, 2-keto-3-deoxy-D-arabinoate; D-KDX, 2-keto-3-deoxy-D-xylonate; a-KGSA, a-ketoglutarate semi-aldehyde.
Organisms:
Accession: P96
Authors:Julia Helmecke
Description:Modified from WikiMedia (see link). Original file was uploaded by WYassineMrabetTalk.
Organisms:- corynebacterium glutamicum P96S39
- Homo sapiens P96S9
Accession: P97
Authors:Julia Helmecke
Description:TCA cycle with glyoxylate shunt and anaplerotic reactions.
Organisms:- P97S
- Aromatoleum aromaticum EbN1 P97S16
- Sulfolobus acidocaldarius P97S1
Accession: P145
Authors:Julia Koblitz
Description:This pathway shows an overview of the anabolism of certain prokaryotic species. All macromolecules are synthesized starting from the TCA cycle.
Organisms:- P145S
- Aromatoleum aromaticum EbN1 P145S16
- Bacillus subtilis P145S11
- Homo sapiens P145S9
- Sulfolobus acidocaldarius P145S1
Accession: P266
Authors:Mohamad Ghaith Alzin
Description:Test Pathway description
Organisms:- Haloarcula hispanica ATCC 33960 P266S26
- Acinetobacter baumannii P266S45
- Aromatoleum aromaticum EbN1 P266S16
- Bacillus subtilis P266S11
- Bacteroides fragilis P266S19
- Bifidobacterium longum subsp. longum JCM 1217 P266S44
- Brassica napus P266S35
- Caenorhabditis elegans P266S32
- Candida albicans P266S40
- Cellulophaga baltica P266S28
- chlamydomonas reinhardtii P266S17
- Chlorella variabilis P266S14
- Chromobacterium vaccinii P266S34
- Clostridioides difficile P266S4
- clostridium tyrobutyricum P266S43
- corynebacterium glutamicum P266S39
- Desulfofundulus kuznetsovii TPOSR P266S29
- Dinoroseobacter shibae P266S24
- Escherichia coli P266S3
- Glycine max P266S38
- Homo sapiens P266S9
- Kappaphycus alvarezii P266S36
- metagenome P266S25
- Mus musculus P266S21
- Mycobacterium tuberculosis P266S42
- Neisseria gonorrhoeae P266S37
- Paenibacillus larvae P266S41
- Phaeobacter inhibens P266S13
- Phocaeicola vulgatus P266S27
- Prorocentrum minimum P266S23
- Pyrococcus furiosus P266S10
- Saccharolobus solfataricus P266S2
- Saccharomyces cerevisiae P266S15
- serratia plymuthica 4Rx13 P266S33
- Solanum lycopersicum P266S31
- Staphylococcus epidermidis RP62A (MRSE) P266S20
- streptomyces clavuligerus P266S18
- Sulfolobus acidocaldarius P266S1
- Sulfolobus islandicus P266S5
- Synechococcus elongatus P266S22
- Synechocystis sp. P266S12
- Vibrio cholerae P266S46
- Xanthomonas translucens P266S30
Accession: P3
Authors:Julia Helmecke
Organisms:
Accession: P4
Authors:Julia Helmecke
Description:Nucleotide Metabolism initially drawn for Sulfolobus acidocaldarius
Organisms:- P4S
- Bacteroides fragilis P4S19
- Homo sapiens P4S9
- Saccharolobus solfataricus P4S2
- serratia plymuthica 4Rx13 P4S33
- Sulfolobus acidocaldarius P4S1
- Sulfolobus islandicus P4S5
Accession: P45
Authors:Julia Helmecke
Description:2-methylcitrate cycle from S. acidocaldarius
Organisms:- P45S
- Homo sapiens P45S9
- Mus musculus P45S21
- Saccharolobus solfataricus P45S2
- Sulfolobus acidocaldarius P45S1
Accession: P72
Authors:Karsten Hiller
Description:Succinate metabolism induced by C. difficile
Organisms:- Homo sapiens P72S9
Accession: P73
Authors:Julia Helmecke
Description:Respiratory chain of Sulfolobus acidocaldarius and close relatives.
Organisms:- P73S
- Acinetobacter baumannii P73S45
- Homo sapiens P73S9
- Mycobacterium tuberculosis P73S42
- Sulfolobus acidocaldarius P73S1
Accession: P74
Authors:Julia Helmecke
Description:TCA cycle from Clostridioides difficile, drawn with assistance from Meina Neumann-Schaal (DSMZ)
Organisms:- Clostridioides difficile P74S4
Accession: P75
Authors:Julia Helmecke
Description:Modified TCA cycle that can be found in many Cyanobacteria.
Organisms:- Chlorella variabilis P75S14
- Synechococcus elongatus P75S22
- Synechocystis sp. P75S12
Accession: P77
Authors:Julia Helmecke
Description:Common Embden-Meyerhof-Parnas glycolysis.
Organisms:- P77S
- Bacillus subtilis P77S11
- Bacteroides fragilis P77S19
- clostridium tyrobutyricum P77S43
- corynebacterium glutamicum P77S39
- Homo sapiens P77S9
- serratia plymuthica 4Rx13 P77S33
- streptomyces clavuligerus P77S18
- Vibrio cholerae P77S46
Accession: P94
Authors:Julia Helmecke
Description:This pathway map covers a general overview of fermentation processes. Fermentation products are displayed in bold. Some cosubstrates (e.g. H2O and CoA) are not shown to improve readability.
Organisms:- Bacteroides fragilis P94S19
- Bifidobacterium longum subsp. longum JCM 1217 P94S44
- chlamydomonas reinhardtii P94S17
- Escherichia coli P94S3
Accession: P95
Authors:Uclasci1616 (on WikiMedia CC BY-SA)
Description:Mevalonate pathway diagram showing the conversion of acetyl-CoA into isopentenyl pyrophosphate, the essential building block of all isoprenoids. The eukaryotic variant is shown in black. Archaeal variants are shown in red and blue. From Wikipedia (https://en.wikipedia.org/wiki/Mevalonate_pathway)
Organisms:- Aromatoleum aromaticum EbN1 P95S16
- Escherichia coli P95S3
- Homo sapiens P95S9
Accession: P101
Authors:Jacqueline Wolf
Organisms:- P101S
- Saccharolobus solfataricus P101S2
- serratia plymuthica 4Rx13 P101S33
Accession: P104
Authors:Nishikant Wase
Description:Modified TAG biosynthesis found in green microalgae Chlamydomonas reinhardtii.
Organisms:- P104S
- chlamydomonas reinhardtii P104S17
Accession: P118
Authors:Nishikant Wase
Organisms:- Bacillus subtilis P118S11
- chlamydomonas reinhardtii P118S17
- serratia plymuthica 4Rx13 P118S33
- Xanthomonas translucens P118S30
Accession: P119
Authors:Nishikant Wase
Organisms:- chlamydomonas reinhardtii P119S17
- serratia plymuthica 4Rx13 P119S33
Accession: P165
Authors:Carsten Reuse
Organisms:- P165S
- Prorocentrum minimum P165S23
- Saccharolobus solfataricus P165S2
Accession: P173
Authors:Carsten Reuse
Organisms:- Acinetobacter baumannii P173S45
- Prorocentrum minimum P173S23
